3D Modeling Workshop in Envision Maker Studio

The Library’s Digital Media Lab is partnering with the Jacob’s School of Engineering’s new Envision Maker Studio to offer a series of workshops around 3D modeling and 3D printing. These workshops are open to all UC San Diego affiliates.

Intro to Solid Modeling  – Fri May 13, 2016 4:30pm – 8:30pm in SME 303

Students will learn to use 3D CAD software to model a case for their cell phones and then 3D print that case before they leave. Attendees will receive Solidworks Licences for their personal computers. Register here.

For questions, please contact DMLtech@ucsd.edu.

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Open Access Publishing Workshop (for Grads, Postdocs) – April 26

OAlogo Is Open Access Publishing right for you?
Expand the reach of your scholarly work

Workshop for Postdocs and Graduate Students
Tuesday, April 26, 2016 from 2:00 PM to 3:30 PM
Horizon Room, Career Services Center

Register at https://libraryopenaccess2016.eventbrite.com

Read more…

Workshop: Increasing Openness and Reproducibility in Quantitative Research

openscienceflyer

There are many actions researchers can take to increase the openness and reproducibility of their work. Please join us for a workshop, hosted by the Center for Open Science, to learn easy, practical steps researchers can take to increase the reproducibility of their work. The workshop will be hands-on. Using example studies, attendees will actively participate in creating a reproducible project from start to finish.

Topics covered:

  • Project documentation
  • Version control
  • Pre-Analysis plans
  • Open source tools like the Center for Open Science’s Open Science Framework to easily implement these concepts in a scientific workflow.

This workshop is aimed at faculty, staff, and students across disciplines, who are engaged in quantitative research. The workshop does not require any specialized knowledge of programming. Participants will gain a foundation for incorporating reproducible, transparent practices into their current workflows.

RSVP:  https://goo.gl/bIHJ5Z

LOCATION: San Diego Supercomputer Center in the Synthesis Center, La Jolla, CA 92093
DATE: Friday, April 29, 2016
TIME: 9:00 am – 12:00 pm

The workshop will be led by April Clyburne-Sherin, Reproducible Research Evangelist at the Center for Open Science and coheads their training programs for reproducible research methods. She has an MS in Epidemiology from the University of Guelph.

February Workshops – PubMed, SciFinder, Citation Management

Here are next month’s Library Workshops (complete list for winter 2016). Classes are free and registration is encouraged. Note the location of the workshop, either the Geisel or Biomedical Library Building.

Library Databases and Search Tools

PubMed Essentials

Feb 4 (Thurs), 12:00 – 1:30 pm, Biomed Lib Bldg, Classroom 3 (Register)

This hands-on workshop focuses on what every user needs to know about PubMed, whether doing a search for a specific author or topic using keywords. Learn to focus your results with limits, become familiar with the features of the advanced search screen, and know how to use UC E-Links to easily get to full text articles.

SciFinder for Chemists and Non-Chemists

Feb 16 (Tues), 2:00 – 3:30 pm, Geisel Lib Bldg, Classroom 1 (Register)

SciFinder is one of the core information resources for exploring the chemical literature, but it’s not just for chemists. It can also be helpful to researchers in engineering, environmental sciences, physics, and radiology and other health sciences.

This hands-on workshop will cover the SciFinder essentials: topic and author searching, improving your search results, accessing the full text articles, and how SciFinder compares with other databases like Web of Science. You’ll also learn to search CAS Registry to find chemical substance information, and get an introduction to the built-in editor for drawing chemical structures and reactions. Attendees must be affiliated with UC San Diego (students, faculty, staff, etc.) with a ucsd.edu email address.

PubMed: Beyond the Essentials

Feb 17 (Wed), 12:00 – 1:30 pm, Biomed Lib Bldg, Classroom 3 (Register)

Move beyond the basics to refine and expand your searching skills. Learn about MeSH terms and how to use them in a search. Use MyNCBI and its numerous tools to keep you updated and to customize PubMed for your most frequent types of searches. Great for the frequent searcher.

And coming in March: PubMed Beyond the Essentials, Substance and Reaction Searching with SciFinder and Reaxys

Information Management Series

Managing Citations

Feb 9 (Tues), 2:00 – 3:30 pm, Biomed Lib Bldg Classroom 3 (Register)

This session will provide an introduction to a variety of tools for managing papers and citations including EndNote & EndNote Online, Zotero, Mendeley and will discuss how to choose the tool that’s right for you.

EndNote Online

Feb 23 (Tues), 11:00 – 12:30 pm, Biomed Lib Bldg Classroom 3 (Register)

The online version of EndNote is available for free. Come learn how to insert citations to your online library and then use them when writing a paper. Users of the desktop version can also synch their online and desktop library, so knowing how to use the online version extends the options.

And coming in March: EndNote Desktop and Mendeley workshops

October 27-28: Software Carpentry Workshop

SCbanner_libhomepage

Join the UC San Diego Library’s  Research & Reference Advisory Services (Data Services) and the Research Data Curation programs for a two-day, intensive Software Carpentry workshop. Software Carpentry’s mission is to give scientists and engineers the tools they need to be more productive and efficient by teaching them basic lab skills for scientific computing. This hands-on workshop will cover basic concepts and tools, including program design in python, version control, data management, and task automation. Participants will be encouraged to collaborate and to apply what they have learned to their own research problems.

Event Location: Biomedical Library Building, BLB Events Room

Time: 9:00am – 5:00pm

There will be a $30 fee associated with this event. Participants must sign up for both days.

Register Here:  www.regonline.com/scarpentry

 

Library Workshops – NCBI Resources, SciFinder, Patents, PubMed

This month’s hands-on workshops to learn more about some of the best resources for your science and engineering research. Classes are free, but registration is strongly encouraged. Note that some classes are in the Geisel Library Building, and others are at the Biomedical Library Building.

 

The UC San Diego Library is hosting a live-streaming webinar from the University of Michigan’s National Center for Biotechnology Information (NCBI) Discovery Workshops, which will be held May 5 & 6. Each 2.5-hour session consists of hands-on work emphasizing a different set of NCBI resources, using specific examples to highlight important features of the resources and tools. The workshops will be broadcast in the Biomedical Library’s Classroom 3, and computers are available.

Gene Expression Resources at the NCBI (register)
May 5 (Tues),
Biomed Lib Bldg, Classroom 3
10:00 – 12:30 pm

You will find, display and analyze microarray and sequence-based expression data that are stored in the Gene Expression Omnibus (GEO), Sequence Read Archive (SRA), UniGene, and Epigenomics databases to investigate the potential for expression of transcript splice variants and examine the levels of expression under varied experimental conditions as well as in different tissues and disease states. You will analyze Microarray data the on-demand GEO2R tool and will explore the precomputed transcript analyses that are displayed on the UniGene and GEO Profiles pages. You will explore genome-aligned RNA-Seq data through the Gene database’s sequence viewer displays and analyze raw RNA-Seq reads in the SRA database using NCBI’s SRA-BLAST service.

NCBI Genomes, Assemblies and Annotation Products: Microbiome to Human (register)
May 6 (Wed),
Biomed Lib Bldg, Classroom 3
10:00 – 12:30 pm

NCBI BioProject, BioSample, Genomes and Assembly databases Annotation products from the Eukaryotic and Microbial genome annotation pipelines Environmental and organismal metagenomes Accessing wgs data in the Sequence Read Archive (SRA) Specialized genomic and SRA BLAST services Downloading genome sequences and next-gen reads from the NCBI FTP and Aspera sites.


SciFinder Essentials for Chemists and Non-Chemists (register)
May 6 (Wed),
Geisel Lib Bldg, Classroom 1
10:00 – 11:30 am

SciFinder is one of the core information resources for exploring the chemical literature, but it’s not just for chemists. It can also be helpful to researchers in engineering, environmental sciences, physics, and radiology and other health sciences.

This hands-on workshop will cover the SciFinder essentials: topic and author searching, improving your search results, accessing the full text articles, and how SciFinder compares with other databases like Web of Science. You’ll also learn to search CAS Registry to find chemical substance information, and get an introduction to the built-in editor for drawing chemical structures and reactions.

Patents & Patent Searching (register)
May 13 (Wed),
Geisel Lib Bldg, Classroom 1
1:00 – 2:30 pm

Patents are critically important in protecting intellectual property and companies are investing fortunes in them to safeguard their inventions. It is estimated that between 2010 and 2012 in the smartphone industry alone, over $20 billion was spent on patent purchases and litigation. Without the protection afforded by patent coverage, technological innovation would dry up.

In this class, you will learn how patents protect your intellectual property and what rights they confer, what to expect in the patent application process, how to read and interpret patent documents, and why international patents matter. Learn how you can work with the UCSD Technology Transfer Office to manage and protect your inventions. Finally, learn about free web search engines you can use to discover if your invention has already been patented. Even if you don’t have an invention on the drawing board, this class will give you valuable insight into how patents work.

PubMed Essentials (register)
May 14 (Thurs),
Biomed Lib Bldg, Classroom 3
11:00 – 12:30 pm

This hands-on workshop focuses on what every user needs to know about PubMed, whether doing a search for a specific author or topic using keywords. Learn to focus your results with limits, become familiar with the features of the advanced search screen, and know how to use UC E-Links to easily get to full text articles.

PubMed: Beyond the Essentials (register)
May 28 (Thurs),
Biomed Lib Bldg, Classroom 3
11:00 am – 12:30 pm

Move beyond the basics to refine and expand your searching skills. Learn about MeSH terms and how to use them in a search. Use MyNCBI and its numerous tools to keep you updated and to customize PubMed for your most frequent types of searches. Great for the frequent searcher.

SciFinder Essentials for Chemists and Non-Chemists Workshop (May 6)

SciFinder Essentials for Chemists and Non-Chemists Workshop

May 6 (Wed), 10:00 – 11:30 am
Geisel Lib Bldg Classroom 3
Register

SciFinder is one of the core information resources for exploring the chemical literature, but it’s not just for chemists. Since SciFinder indexes the literature in chemistry and related sciences it can also be extremely helpful to researchers in engineering (chemical, nano, materials science, bioengineering, MAE, etc.), environmental sciences, physics, and radiology and other biomedical sciences.

This hands-on workshop will cover the SciFinder essentials: topic and author searching, improving your search results, accessing the full text articles, and how SciFinder compares with other databases like Web of Science, PubMed and Reaxys. You’ll also learn to search CAS Registry to find chemical substance information, and get an introduction to the built-in editor for drawing chemical structures and reactions.

February Workshops – PubMed, Refworks, and Patents

The Library’s Febrary workshops (complete list for Winter 2015)

PubMed Essentials
Feb 4 (Wed), 2:00 – 3:30 pm
Biomed Lib Bldg, Classroom 3
Register

This hands-on workshop focuses on what every user needs to know about PubMed, whether doing a search for a specific author or topic using keywords. Learn to focus your results with limits, become familiar with the features of the advanced search screen, and know how to use UC E-Links to easily get to full text articles.

PubMed: Beyond the Essentials
Feb 18 (Wed), 2:00 – 3:30 pm
Biomed Lib Bldg, Classroom 3
Register

Move beyond the basics to refine and expand your searching skills. Learn about MeSH terms and how to use them in a search. Use MyNCBI and its numerous tools to keep you updated and to customize PubMed for your most frequent types of searches. Great for the frequent searcher.

Patents & Patent Searching
Feb. 12, 2015 (Tues), 10:00 am – 12:00 pm
Geisel Lib Classroom 1
Register

Patents are critically important in protecting intellectual property and companies are investing fortunes in them to safeguard their inventions. It is estimated that between 2010 and 2012 in the smartphone industry alone, over $20 billion was spent on patent purchases and litigation. Without the protection afforded by patent coverage, technological innovation would dry up.

In this class, you will learn how patents protect your intellectual property and what rights they confer, what to expect in the patent application process, how to read and interpret patent documents, and why international patents matter. Learn how you can work with the UCSD Technology Transfer Office to manage and protect your inventions. Finally, learn about free web search engines you can use to discover if your invention has already been patented. Even if you don’t have an invention on the drawing board, this class will give you valuable insight into how patents work.

Refworks
Feb 18 (Wed), 10:30 am – 12:00 pm
Geisel Lib Bldg Classroom 3
Register

Learn how to organize your references and instantly format your research papers, articles, and other publications using APA, NLM and hundreds of other writing styles. You’ll also learn how to download references using your favorite research databases and library catalogs. Collaborate with other authors via the RefShare tool.

Library Workshops in January – EndNote and SciFinder

The Library’s January workshops (complete list for Winter 2015)

EndNote

Jan 20 (Tues), 2:00 – 3:30 pm
Geisel Lib Bldg Classroom 1
Register

Writing a research paper and need to manage your references? Using EndNote already, but want to learn about its “power” features (e.g., Connect, “Cite While You Write,” etc.)? Take this workshop to learn to build your own EndNote reference library and work with Word to write your paper and seamlessly create bibliographies. Attendees from all departments are welcome.

Special EndNote instructor, Doug Nguyen, from Thomson-Reuters will be teaching the session.

—————-

SciFinder Essentials for Chemists and Non-Chemists

Jan 29 (Thurs), 10:00 – 11:30 am
Biomed Lib Bldg Classroom 3
Register

SciFinder is one of the core information resources for exploring the chemical literature, but it’s not just for chemists. It can also be helpful to researchers in engineering, environmental sciences, physics, and radiology and other health sciences.

This hands-on workshop will cover the SciFinder essentials: topic and author searching, improving your search results, accessing the full text articles, and how SciFinder compares with other databases like Web of Science. You’ll also learn to search CAS Registry to find chemical substance information, and get an introduction to the built-in editor for drawing chemical structures and reactions.

Information Management Workshops in November

Upcoming workshops to help you manage your research:

Managing Citations
Nov 13 (Thurs), 12:00 – 1:30 pm, Geisel Lib Bldg Classroom 1
Register

This session will provide an introduction to a variety of tools for managing papers and citations including EndNote, RefWorks, Zotero, Mendeley and discuss how to choose the tool that’s right for you.

Refworks
Nov 19 (Wed), 2:00 – 3:30 pm, Biomed Lib Bldg Classroom 3
Register

Learn how to organize your references and instantly format your research papers, articles, and other publications using APA, NLM and hundreds of other writing styles. You’ll also learn how to download references using your favorite research databases and library catalogs. Collaborate with other authors via the RefShare tool.

EndNote
Dec 4 (Thurs), 12:00 – 1:30 pm, Geisel Lib Bldg Classroom 1
Register

Writing a research paper and need to manage your references? Using EndNote already, but want to learn about its “power” features (e.g., Connect, “Cite While You Write,” etc.)? Take this workshop to learn to build your own EndNote reference library and work with Word to write your paper and seamlessly create bibliographies. Note: We use examples from life sciences databases, but attendees from other departments are welcome.

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