Chemistry & Biochemistry, New UCSD Articles

Recent articles from faculty from the UC San Diego Department of Chemistry and Biochemistry, from Web of Science:

Canzi, G.; Mrse, A. A.; Kubiak, C. P., Diffusion-Ordered NMR Spectroscopy as a Reliable Alternative to TEM for Determining the Size of Gold Nanoparticles in Organic Solutions. Journal of Physical Chemistry C 2011, 115 (16), 7972-7978.

Dibrov, S. M.; McLean, J.; Parsons, J.; Hermann, T., Self-assembling RNA square. Proceedings of the National Academy of Sciences of the United States of America 2011, 108 (16), 6405-6408.

Dominguez, G.; Wilkins, G.; Thiemens, M. H., The Soret effect and isotopic fractionation in high-temperature silicate melts. Nature 2011, 473 (7345), 70-U134.

Emerich, B. M.; Moore, C. E.; Fox, B. J.; Rheingold, A. L.; Figueroa, J. S., Protecting-Group-Free Access to a Three-Coordinate Nickel(0) Tris-isocyanide. Organometallics 2011, 30 (9), 2598-2608.

Ling, T. T.; Xu, J.; Smith, R.; Ali, A.; Cantrell, C. L.; Theodorakis, E. A., Synthesis of (-)-callicarpenal, a potent arthropod repellent. Tetrahedron 2011, 67 (17), 3023-3029.

Masterson, L. R.; Shi, L.; Metcalfe, E.; Gao, J. L.; Taylor, S. S.; Veglia, G., Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America 2011, 108 (17), 6969-6974.

Nicolaou, K. C.; Simmons, N. L.; Chen, J. S.; Haste, N. M.; Nizet, V., Total synthesis and biological evaluation of marinopyrrole A and analogs. Tetrahedron Letters 2011, 52 (17), 2041-2043.

Radford, R. J.; Brodin, J. D.; Salgado, E. N.; Tezcan, F. A., Expanding the utility of proteins as platforms for coordination chemistry. Coordination Chemistry Reviews 2011, 255 (7-8), 790-803.

Sanchez, K. M.; Kang, G. P.; Wu, B. J.; Kim, J. E., Tryptophan-Lipid Interactions in Membrane Protein Folding Probed by Ultraviolet Resonance Raman and Fluorescence Spectroscopy. Biophysical Journal 2011, 100 (9), 2121-2130.

Shu, X. K.; Lev-Ram, V.; Deerinck, T. J.; Qi, Y. C.; Ramko, E. B.; Davidson, M. W.; Jin, Y. S.; Ellisman, M. H.; Tsien, R. Y., A Genetically Encoded Tag for Correlated Light and Electron Microscopy of Intact Cells, Tissues, and Organisms. PLoS Biology 2011, 9 (4).

Stevenson, J. D.; Wolynes, P. G., The Ultimate Fate of Supercooled Liquids. Journal of Physical Chemistry A 2011, 115 (16), 3713-3719.

Wu, E. C.; Andrew, J. S.; Buyanin, A.; Kinsella, J. M.; Sailor, M. J., Suitability of porous silicon microparticles for the long-term delivery of redox-active therapeutics. Chemical Communications 2011, 47 (20), 5699-5701.

Bucher, D.; Grant, B. J.; Markwick, P. R.; McCammon, J. A., Accessing a Hidden Conformation of the Maltose Binding Protein Using Accelerated Molecular Dynamics. PL0S Computational Biology 2011, 7 (4).

DeVries, I.; Ferreiro, D. U.; Sanchez, I. E.; Komives, E. A., Folding Kinetics of the Cooperatively Folded Subdomain of the IkB alpha Ankyrin Repeat Domain. Journal of Molecular Biology 2011, 408 (1), 163-176.

Eltit, J. M.; Li, H. L.; Ward, C. W.; Molinski, T.; Pessah, I. N.; Allen, P. D.; Lopez, J. R., Orthograde dihydropyridine receptor signal regulates ryanodine receptor passive leak. Proceedings of the National Academy of Sciences of the United States of America 2011, 108 (17), 7046-7051.

Grindberg, R. V.; Ishoey, T.; Brinza, D.; Esquenazi, E.; Coates, R. C.; Liu, W. T.; Gerwick, L.; Dorrestein, P. C.; Pevzner, P.; Lasken, R.; Gerwick, W. H., Single Cell Genome Amplification Accelerates Identification of the Apratoxin Biosynthetic Pathway from a Complex Microbial Assemblage. PLoS One 2011, 6 (4).

King, C. C.; Sastri, M.; Chang, P.; Pennypacker, J.; Taylor, S. S., The Rate of NF-kappa B Nuclear Translocation Is Regulated by PKA and A Kinase Interacting Protein 1. PLoS One 2011, 6 (4).

Molinski, T. F.; Ko, J.; Reynolds, K. A.; Lievens, S. C.; Skarda, K. R., N,N ‘-Methyleno-didemnin A from the Ascidian Trididemnum solidum. Complete NMR Assignments and Confirmation of the Imidazolidinone Ring by Strategic Analysis of (1)J(CH). Journal of Natural Products 2011, 74 (4), 882-887.

Muskatel, B. H.; Remacle, F.; Thiemens, M. H.; Levine, R. D., On the strong and selective isotope effect in the UV excitation of N-2 with implications toward the nebula and Martian atmosphere. Proceedings of the National Academy of Sciences of the United States of America 2011, 108 (15), 6020-6025.

Nicolaou, K. C.; Aversa, R. J., Maitotoxin: An Inspiration for Synthesis. Israel Journal of Chemistry 2011, 51 (3-4), 359-377.

Pourayoubi, M.; Golen, J. A.; Chaijan, M. R.; Divjakovic, V.; Negari, M.; Rheingold, A. L., The hydrogen-bonded dimers of N,N ‘,N ”-tricyclohexylphosphoric triamide in new tin(IV) and copper(II) complexes. Acta Crystallographica Section C-Crystal Structure Communications 2011, 67, M160-M164.

Ruminski, A. M.; Barillaro, G.; Chaffin, C.; Sailor, M. J., Internally Referenced Remote Sensors for HF and Cl-2 Using Reactive Porous Silicon Photonic Crystals. Advanced Functional Materials 2011, 21 (8), 1511-1525.

Sander, T.; Frolund, B.; Bruun, A. T.; Ivanov, I.; McCammon, J. A.; Balle, T., New insights into the GABA(A) receptor structure and orthosteric ligand binding: Receptor modeling guided by experimental data. Proteins-Structure Function and Bioinformatics 2011, 79 (5), 1458-1477.

Shoemaker, R.; Wang, W.; Zhang, K., Mediators and dynamics of DNA methylation. Wiley Interdisciplinary Reviews-Systems Biology and Medicine 2011, 3 (3), 281-298.

Tang, J. H.; Lander, G. C.; Olia, A.; Li, R.; Casjens, S.; Prevelige, P.; Cingolani, G.; Baker, T. S.; Johnson, J. E., Peering Down the Barrel of a Bacteriophage Portal: The Genome Packaging and Release Valve in P22. Structure 2011, 19 (4), 496-502.

Yoon, H. J.; Dakanali, M.; Lichlyter, D.; Chang, W. M.; Nguyen, K. A.; Nipper, M. E.; Haidekker, M. A.; Theodorakis, E. A., Synthesis and evaluation of self-calibrating ratiometric viscosity sensors. Organic & Biomolecular Chemistry 2011, 9 (9), 3530-3540.

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