Recent UCSD Chemistry, Biochemistry Articles

Recent articles from the Department of Chemistry & Biochemistry faculty:

Agrawal, A.; Johnson, S. L.; Jacobsen, J. A.; Miller, M. T.; Chen, L. H.; Pellecchia, M.; Cohen, S. M., Chelator Fragment Libraries for Targeting Metalloproteinases. ChemMedChem 2010, 5 (2), 195-199.

Durrant, J. D.; Amaro, R. E.; Xie, L.; Urbaniak, M. D.; Ferguson, M. A. J.; Haapalainen, A.; Chen, Z. J.; Di Guilmi, A. M.; Wunder, F.; Bourne, P. E.; McCammon, J. A., A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology. Plos Computational Biology 2010, 6 (1).

Esposito, M.; Lindenberg, K.; Van den Broeck, C., Extracting chemical energy by growing disorder: efficiency at maximum power. Journal of Statistical Mechanics-Theory and Experiment 2010.

Glover, S. D.; Goeltz, J. C.; Lear, B. J.; Kubiak, C. P., Inter- or intramolecular electron transfer between triruthenium clusters: we’ll cross that bridge when we come to it. Coordination Chemistry Reviews 2010, 254 (3-4), 331-345.

Hayden, A. E.; Paton, R. S.; Becker, J.; Lim, Y. H.; Nicolaou, K. C.; Houk, K. N., Origins of Regioselectivity of Diels-Alder Reactions for the Synthesis of Bisanthraquinone Antibiotic BE-43472B. Journal of Organic Chemistry 2010, 75 (3), 922-928.

Paesani, F.; Voth, G. A., A quantitative assessment of the accuracy of centroid molecular dynamics for the calculation of the infrared spectrum of liquid water. Journal of Chemical Physics 2010, 132 (1).

Park, J. H.; von Maltzahn, G.; Xu, M. J.; Fogal, V.; Kotamraju, V. R.; Ruoslahti, E.; Bhatia, S. N.; Sailor, M. J., Cooperative nanomaterial system to sensitize, target, and treat tumors. Proceedings of the National Academy of Sciences of the United States of America 2010, 107 (3), 981-986.

Salgado, E. N.; Ambroggio, X. I.; Brodin, J. D.; Lewis, R. A.; Kuhlman, B.; Tezcan, F. A., Metal templated design of protein interfaces. Proceedings of the National Academy of Sciences of the United States of America 2010, 107 (5), 1827-1832.

Savee, J. D.; Mann, J. E.; Continetti, R. E., Dissociative Charge Exchange Dynamics of HOCO+ and DOCO+. Journal of Physical Chemistry A 2010, 114 (3), 1485-1491.

Watrous, J.; Burns, K.; Liu, W. T.; Patel, A.; Hook, V.; Bafna, V.; Barry, C. E.; Bark, S.; Dorrestein, P. C., Expansion of the mycobacterial “PUPylome”. Molecular Biosystems 2010, 6 (2), 376-385.

Yasgar, A.; Foley, T. L.; Jadhav, A.; Inglese, J.; Burkart, M. D.; Simeonov, A., A strategy to discover inhibitors of Bacillus subtilis surfactin-type phosphopantetheinyl transferase. Molecular Biosystems 2010, 6 (2), 365-375.

Benson, E. E.; Rheingold, A. L.; Kubiak, C. P., Synthesis and Characterization of 6,6 ‘-(2,4,6-Triisopropylphenyl)-2,2 ‘-bipyridine (tripbipy) and Its Complexes of the Late First Row Transition Metals. Inorganic Chemistry 2010, 49 (4), 1458-1464.

Bogdan, A.; Molina, M. J.; Tenhu, H.; Mayer, E.; Loerting, T., Formation of mixed-phase particles during the freezing of polar stratospheric ice clouds. Nature Chemistry 2010, 2 (3), 197-201.

Cogen, A. L.; Yamasaki, K.; Sanchez, K. M.; Dorschner, R. A.; Lai, Y. P.; MacLeod, D. T.; Torpey, J. W.; Otto, M.; Nizet, V.; Kim, J. E.; Gallo, R. L., Selective Antimicrobial Action Is Provided by Phenol-Soluble Modulins Derived from Staphylococcus epidermidis, a Normal Resident of the Skin. Journal of Investigative Dermatology 2010, 130 (1), 192-200.

Dutta, S.; Higginson, C. J.; Ho, B. T.; Rynearson, K. D.; Dibrov, S. M.; Hermann, T., 1,3-Diazepanes of Natural Product-Like Complexity from Cyanamide-Induced Rearrangement of Epoxy-delta-lactams. Organic Letters 2010, 12 (2), 360-363.

Feng, P. L.; Stephenson, C. J.; Amjad, A.; Ogawa, G.; del Barco, E.; Hendrickson, D. N., Large Spin-State Changes in Isostructural Cyanate- and Azide-Bridged (Mn3Mn2II)-Mn-III Single-Molecule Magnets. Inorganic Chemistry 2010, 49 (4), 1304-1306.

Ferreiro, D. U.; Komives, E. A., Molecular Mechanisms of System Control of NF-kappa B Signaling by I kappa B alpha. Biochemistry 2010, 49 (8), 1560-1567.

Khade, P.; Joseph, S., Functional interactions by transfer RNAs in the ribosome. FEBS Letters 2010, 584 (2), 420-426.

Sarma, G. N.; Kinderman, F. S.; Kim, C.; von Daake, S.; Chen, L. R.; Wang, B. C.; Taylor, S. S., Structure of D-AKAP2:PKA RI Complex: Insights into AKAP Specificity and Selectivity. Structure 2010, 18 (2), 155-166.

Shanks, N. F.; Maruo, T.; Farina, A. N.; Ellisman, M. H.; Nakagawa, T., Contribution of the Global Subunit Structure and Stargazin on the Maturation of AMPA Receptors. Journal of Neuroscience 2010, 30 (7), 2728-2740.

Stevenson, J. D.; Wolynes, P. G., A universal origin for secondary relaxations in supercooled liquids and structural glasses. Nature Physics 2010, 6 (1), 62-68.

Stigers, D. J.; Ferdani, R.; Weisman, G. R.; Wong, E. H.; Anderson, C. J.; Golen, J. A.; Moore, C.; Rheingold, A. L., A new phosphonate pendant-armed cross-bridged tetraamine chelator accelerates copper(II) binding for radiopharmaceutical applications. Dalton Transactions 2010, 39 (7), 1699-1701.

Sutharsan, J.; Dakanali, M.; Capule, C. C.; Haidekker, M. A.; Yang, J.; Theodorakis, E. A., Rational Design of Amyloid Binding Agents Based on the Molecular Rotor Motif. ChemMedChem 2010, 5 (1), 56-60.

Trizac, E.; Levy, Y.; Wolynes, P. G., Capillarity theory for the fly-casting mechanism. Proceedings of the National Academy of Sciences of the United States of America 2010, 107 (7), 2746-2750.

Wang, Z. Q.; Tanabe, K. K.; Cohen, S. M., Tuning Hydrogen Sorption Properties of Metal-Organic Frameworks by Postsynthetic Covalent Modification. Chemistry-a European Journal 2010, 16 (1), 212-217.

Wu, C. H.; Das, B. B.; Opella, S. J., H-1-C-13 hetero-nuclear dipole-dipole couplings of methyl groups in stationary and magic angle spinning solid-state NMR experiments of peptides and proteins. Journal of Magnetic Resonance 2010, 202 (2), 127-134.

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